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Interactive program

Click the session of interest for futher information.
Each lecture session contains 10 min discussion.

Mon 25 Tue 26 Wed 27 Thu 28 Fri 29

Monday

25 September 2023

9:00

10:00

11:00

12:00

13:00

14:00

15:00

16:00

17:00

18:00

19:00

09:00 - 09:50
Registration

09:50 - 10:10
Opening words

10:10 - 11:10
Computational Enzymology - Enzyme Reactions and active sites in 1D, 2D and 3D,
Janet Thornton

11:10 - 12:10
Pre-steady and steady state kinetics of enzyme catalysed reactions,
Ita Gruić-Sovulj

13:30 - 14:30
KinTek Explorer software: explore key kinetic concepts,
Kenneth A. Johnson

17:00 - 19:00
2- minute talks and
Poster session

09:00 - 09:50

14:30 - 16:30
Tutorial on using PDBe and PDBe-KB tools,
Deepti Gupta

09:00 - 09:50

12:10 - 13:30
Lunch and Coffee Break

16:30 - 17:00
Coffee Break

09:00 - 09:50

17:00 - 19:00
2-minute talks and
Poster Session

Tuesday

26 September 2023

9:00

10:00

11:00

12:00

13:00

14:00

15:00

16:00

17:00

18:00

19:00

09:30 - 10:30
Allosteric pathways in protein function,
Tina Perica

10:30 - 11:30
Molecular dynamics simulation as a tool in protein engineering,
Chris Oostenbrink

13:00 - 15:00
MD simulations,
Chris Oostenbrink

15:00 - 16:30
Analysis of Protein Conformational Changes,
Chris Oostenbrink

17:00 - 18:30
Analysis of Protein Conformational Changes,
Chris Oostenbrink

11:30 - 13:00
Lunch and Coffee break

16:30 - 17:00
Coffee break

Wednesday

27 September 2023

9:00

10:00

11:00

12:00

13:00

14:00

15:00

16:00

17:00

18:00

19:00

20:00

10:30 - 10:50
FEBS-MIC, FEBS opportunities for scientists in molecular life sciences,
Prof. Antonio Díaz Quintana

18:00 - 19:00
Design of new protein functions using deep learning,
David Baker, Online

19:00 - 20:00
Departure for the dinner in town
20:00 Dinner in Johann Franck, Trg bana Josipa Jelačića 9, Zagreb

09:00 - 10:30
Introduction to de novo protein design using PyRosetta and deep learning methods,
Ajasja Ljubetič

10:50 - 12:30
Parametric design of helical bundles with PyRosetta,
Ajasja Ljubetič

14:00 - 15:30
Design of side-chains using ProteinMPNN and AlphaFold2,
Ajasja Ljubetič

15:30 - 17:00
Designing proteins using Rosetta Fold Diffusion,
Ajasja Ljubetič

12:30 - 14:00
Lunch and Coffee break

17:00 - 18:00
Coffee break

Thursday

28 September 2023

9:00

10:00

11:00

12:00

13:00

14:00

15:00

16:00

17:00

18:00

19:00

09:30 - 10:30
The use of (QM/MM) biomolecular simulation to understand enzyme-catalyzed reactions: activity and selectivity,
Marc Van der Kamp

10:30 - 11:30
Reaction Pathway Sampling by Empirical Valence Bond Simulation,
Jernej Stare

13:00 - 14:00
Computational tools for designing and engineering enzymes,
Jiri Damborsky

18:00 - 19:00
Q&A session on all tutorials and lectures during the course

14:00 - 15:30
Engineering Protein Stability (FireProt; FireProtASR and FireProtDB),
Jiri Damborsky and David Bednář

15:30 - 16:30
Identification of Enzyme Tunnels and Ligand Pathways - CaverWeb and CaverDock,
Jiri Damborsky and David Bednář

16:30 - 17:30
Indentification of Hotspots and Design of Smart Libraries - HotSpot Wizard,
Jiri Damborsky and David Bednář

11:30 - 13:00
Lunch and Coffee break

17:30 - 18:00
Coffee break

Friday

29 September 2023

9:00

10:00

11:00

12:00

09:30 - 10:30
Novel enzyme engineering strategies for applications in biopolymer science,
Per-Olof Syrén

10:30 - 11:30
Designing proteins with customized catalytic properties,
Donald Hilvert

11:30 - 12:00
The Best Presentation and FEBS Open Bio Poster Prize Award
Concluding remarks Aleksandra Maršavelski

Session Types

Full Program in PDF

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